Open Source Code Repository

The links below are to code repos maintained by individual lab members.

GitHub Code Repositories

  • GRIN Lens Toolbox: GRIN Lens image analysis software (matlab)
  • NeuroFIT: fluorescent imaging and cell reconstruction toolbox (matlab)
  • plasticity: MCMC framework for testing S3D models of neural plasticity (matlab & python)
  • NeuroMesh: mesh maker for designing morphological surface meshes of neurons (matlab & python)
  • FLIMtoolbox: a toolbox for analyzing FLIM / FRET data (matlab)
  • CellFinder: automated cell detection and image processing to quantify changes in fluorescence intensity